askBrassica

Instalación

Elige la app de IA que usas y copia la configuración.

Pasó 2/3 revisiones · Lo que preguntas pasa por el servidor del autor (askbrassica.plantdatabases.org) · ✓ Comandos revisados el 14 nov 2026

claude mcp add --transport http --scope user askbrassica https://askbrassica.plantdatabases.org/mcp

{
  "mcpServers": {
    "askbrassica": {
      "url": "https://askbrassica.plantdatabases.org/mcp"
    }
  }
}

{
  "servers": {
    "askbrassica": {
      "type": "http",
      "url": "https://askbrassica.plantdatabases.org/mcp"
    }
  }
}

Qué apps pueden usarlo

Según cómo se conecta este servidor y la documentación de cada app, comprobado el 10 nov 2026.

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ClaudeChatGPTGooseLM StudioMsty StudioCherry StudioCursorVS Code + GitHub CopilotVisual StudioWindsurf (Devin Desktop)ZedKiroClineContinueJetBrains AI AssistantClaude CodeCodex CLIGemini CLIOpenCodenodecodeWarpLibreChatOpen WebUIRaycast

Todas las apps, con ventajas y desventajas →

Qué puede hacer

Nombres y descripciones de las herramientas tal como los informó el servidor el 14 nov 2026. Los escribió el creador, no nosotros; los mostramos como texto sin formato.

• search_data

  Full-text search across all askBrassica resources (genes, germplasm, genotyping datasets, files). Filters (exact values): database e.g. 'Ensembl Plants', 'Brassica Genome (brassicagenome.net)', 'GBIF genebank accessions'; entry_type e.g. 'Gene annotation', 'Germplasm', 'Genotypin

• find_germplasm

  Find Brassica genebank accessions by accession number or name: Brassica, Camelina, Sinapis and Raphanus accessions from GBIF, with the holding genebank (FAO WIEWS code) and accession number; mostly Svalbard Global Seed Vault safety duplicates. Passport data are minimal (no traits

• data_sources

  What askBrassica currently indexes: record counts per database and data type, and data versions.

• find_gene

  Look up a gene by Ensembl gene ID or gene name/symbol in Ensembl Plants: species, location, assembly, biotype, description and link. Names are searched in all of: brassica_napus, brassica_rapa (Chiifu), brassica_rapa_ro18 (R-o-18), brassica_rapa_z1 (Z1), brassica_oleracea, brassi

• genes_in_region

  Genes overlapping a region of one Ensembl Plants genome (max 5 Mb). species is an Ensembl name, e.g. 'brassica_rapa' (chromosomes A01-A10) or 'brassica_oleracea' (C1-C9); chromosome names as in that assembly. Brassica napus is scaffold-level in Ensembl Plants (Darmor-bzh v4.1), s

• orthologues

  Orthologues of a gene from Ensembl Plants Compara (gene trees across plant genomes), e.g. the Brassica copies of an Arabidopsis gene. gene: Ensembl ID or name; target_species: Ensembl name to restrict to (e.g. 'brassica_napus'). Returns orthologue IDs, species, relationship (one2

• pangenome_gene

  Presence/absence of a gene across the accessions of a crop pangenome: how many accessions carry it, core or variable, which accessions lack it (and which carry it, if fewer), location, description and genome browser link. gene: a pangenome gene ID, a B. napus Ensembl (Darmor-bzh

• pangenome_region

  Pangenome genes in a region (max 5 Mb) with how many accessions carry each, e.g. to see which genes in a QTL interval show presence/absence variation. chromosome like 'A01' or 'chrA01'. Datasets: 'bnapus' = B. napus pangenome (Darmor-bzh v8.1 plus 52 accessions, 94,013 genes; IDs

• pangenome_compare

  Genes whose presence frequency differs most between two groups of pangenome accessions (accession names from pangenome_accessions, 'form: ' selectors such as 'form:Synthetic' or 'form:cauliflower', or ['all']). min_diff is the minimum absolute frequency difference (0-1); positive

• pangenome_accessions

  Accessions in a crop pangenome with their metadata (form, genotype code, synthetic parents where known) and the number of genes each carries and lacks. dataset defaults to the first one. Datasets: 'bnapus' = B. napus pangenome (Darmor-bzh v8.1 plus 52 accessions, 94,013 genes; ID

• arabidopsis_function

  Function of a gene through its Arabidopsis thaliana orthologue(s): Ensembl Plants Compara orthologues, then UniProtKB curated function, protein and gene names, mutant (disruption) phenotype, subcellular location and GO terms. gene: an Ensembl gene ID or name of any crop genome he

• resistance_loci

  Curated resistance loci of Brassica crops: blackleg (Leptosphaeria maculans: Rlm1-Rlm14, LepR1-3, RlmS), clubroot (Plasmodiophora brassicae: CRa, CRb, Crr1-5, Rcr1-10, PbBa...), and in Brassica vegetables downy mildew (BraDM, Pp523, BoDMR2...), Fusarium yellows (FocBo1, Foc-Br1),

• resistance_gene_analogues

  Resistance gene analogues (RGAs) in the B. napus pangenome (1,749 genes: NBS-LRR classes TNL, CNL, RNL, NL, TN, CN, RN, NBS, TX; receptor-like kinases RLK; receptor-like proteins RLP), with presence/absence across the 53 pangenome accessions, description and location (Darmor-bzh

• bnir_gwas

  Genome-wide association peaks for B. napus traits from BnIR (HZAU): 135 traits from 10 GWAS studies (seed oil fatty acids and erucic acid, glucosinolates, oil content, flowering time, plant height, branching, silique and seed traits, cadmium, salt and other stress responses...).

• bnir_expression

  B. napus (ZS11) RNA-seq expression in TPM from BnIR: 'stress' (leaf and root time courses, 0.25-24 h, under salt, drought, osmotic, heat, cold 4 C and freezing -4 C, with controls at the same time points), 'hormone' (leaf and root, IAA, ACC, GA, ABA, trans-zeatin, JA, brassinolid

• expression_experiments

  Brassica RNA-seq experiments held by askBrassica (Expression Atlas and SRA study SRP159041 (B. napus leaf cold, heat and drought; quantified by askBrassica)): baseline (TPM by tissue / developmental stage / treatment) and differential (stress, pathogen, genotype contrasts). query

• gene_expression

  Where and when a Brassica gene is expressed, and under which treatments it changes, from Expression Atlas and SRA study SRP159041 (B. napus leaf cold, heat and drought; quantified by askBrassica). gene: Ensembl gene ID (e.g. GSBRNA2T00000001001 for B. napus, Bra000001 for B. rapa

• expression_genes

  Genes characteristic of a tissue/stage or responsive to a treatment in one Expression Atlas experiment. Baseline experiment + group (text matched to group labels, e.g. 'root', 'grain'): genes with TPM >= min_tpm in a matching group ranked by specificity = (max TPM in matching gro

• snp_lines

  Find SNP-genotyped lines in CropSNPdb by name or AGG accession (e.g. 'Westar', 'Darmor'). Returns line name, accession(s), country, pedigree, status, breeding organisation and donor. dataset: 'Brassica napus Darmor v81' (default, 459 lines), 'Brassica napus Darmor v41', 'Brassica

• snp_genotypes

  SNP genotype calls for up to 50 lines in a region (chromosome like 'A01'). Returns markers with positions and each line's call. Keep regions small (a few Mb) for many lines.

• snp_compare_lines

  Compare two lines' SNP genotypes on a chromosome (optionally a region): markers compared, identical, different, % identity and the regions where they differ (useful for pedigree/introgression questions).

• snp_haplotype_carriers

  Lines that share a reference line's SNP haplotype in a region (max 5 Mb), e.g. which genebank lines carry the Westar haplotype around a gene. Only markers polymorphic in the panel (minor allele frequency >= min_maf) are used, and a match needs calls at >= min_called of them with

• snp_markers

  SNP array markers (IDs and positions) in a region, with the total count.

• snp_phenotypes

  Field trial trait data held in CropSNPdb for this crop (T3 trials with Crop Ontology trait IDs, Australian Grains Genebank records). With no arguments, lists the available traits. Filter by line and/or trait: trait matches the exact name or any part of it (e.g. 'Height', 'grain y

• search_literature

  Search publications and preprints in Europe PMC (PubMed, PMC, bioRxiv and others). query: free text or Europe PMC syntax (e.g. 'grain size QTL 6A', 'TITLE:"pan-genome"'). gene: optional gene name or Ensembl ID; its curated synonyms and RefSeq IDs are OR-ed into the query (e.g. ge

• get_paper

  Full record for one paper: DOI (10.xxxx/..), PMID (digits) or PMCID (PMC...). Returns the abstract, open-access status and full-text links.

• brapi_germplasm_studies

  Phenotyping studies (field and glasshouse trials) with trait data for a Brassica line, live from the BrAPI nodes (currently the INRAE Brassica trials in GnpIS (rapeseed and cabbage collections), served through FAIDARE). germplasm: a cultivar or line name (matched exactly; upper/t

• brapi_observations

  Trait observations for a Brassica line from the BrAPI nodes (currently the INRAE Brassica trials in GnpIS (rapeseed and cabbage collections), served through FAIDARE), summarised per study and variable: n, mean, min, max (numeric values) or the distinct values, season and location

• gene_pathways

  Plant Reactome metabolic and signalling pathways of a gene (Gramene), with the top-level category and a link to the pathway diagram. gene: an Ensembl Plants gene ID or a gene name/symbol. Pathways are projected from rice by orthology, so say they are inferred. Use pathway_genes f

• pathway_genes

  Genes in a Plant Reactome pathway: pathway is a name or words from it ('jasmonic acid biosynthesis', 'gibberellin', 'flavonoid') or a stable ID (R-TAE-1119332). species: a species name as Plant Reactome writes it ('Triticum aestivum', 'Brassica napus', 'Glycine max'); default all

• trait_hits

  Trait-associated positions across the genome for a chromosome overview: GWAS marker-trait associations and peaks, named trait genes and mapped trait loci held by this site, with chromosome sizes, each with a genome browser link where the assembly is loaded. trait: words to match

• brassica_gene_view

  Interactive gene view for one Brassica gene: a relationship map of its orthologues in B. rapa, B. oleracea, B. juncea, Camelina and Arabidopsis, Arabidopsis function, presence/absence across the B. napus (53 accessions) or B. oleracea (10) pangenome by crop form, BnIR stress resp

Revisiones básicasi

Revisamos información que cualquiera puede ver; no hemos leído el código. Las revisiones que no aplican no se cuentan. · Revisado el 14 nov 2026

• ! Precaución

  El creador coincide con el repo

  El registro no indica ningún repo de código fuente, así que no podemos relacionar a quien lo publicó (plantdatabases.org) con el código

• … Aún sin revisar

  Sigue en mantenimiento

  Todavía no hemos leído este repo en GitHub

• … Aún sin revisar

  Tiene licencia

  Todavía no hemos leído este repo en GitHub

• ✓ Superada

  El endpoint responde

  Respondió en 798 ms (HTTP 200)

• – No aplica

  Inicio de sesión con OAuth

  No hace falta iniciar sesión

• ✓ Superada

  Sin instrucciones ocultas en las descripciones de herramientas

  Leímos 32 descripciones de herramientas y no encontramos instrucciones ocultas para la IA

Reseñas de usuarios

Aún no hay reseñas

Inicia sesión con Google para escribir una reseña

Comparado con otros en Búsqueda y memoria de IAi

• Más estrellas que el 0% de los otros 6096 servidores de esta categoría
• Publicado en el registro más recientemente que el 99% de los otros 6096 servidores de esta categoría
• Revisiones básicas iguales o mejores que el 50% de los otros 6096 servidores de esta categoría

Comparado con todos los servidores activos de esta categoría en el registro. Las estrellas solo cuentan cuando quien lo publica es dueño del repo.

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Cómo leer una tarjeta:↓ Descargas por semanai★ Estrellas de GitHubiTres pilares: reseñas · revisiones · usoiActualizado = fecha en que se publicó la última versión en el registroi

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