Codebase structural query — Atom

Name: Codebase structural query — Atom
Author: nrupala

by nrupalaversion 0.1.0i★ 0iRuns in the cloud

Registry nameorg.aimlds/atom-codebase-structural-query

How to install

What it does

Codebase structural query, delivered per API call as an atom service on Conduit Atoms.

Connects Runs in the cloud
Account or key Needs Authorization
Category Developer tools

Use together with

Skills that teach the AI this kind of work; they work alongside this one

rea

Reverse engineer anything with agents, from app behavior down to native binaries.

by morluto★ 461,7511 skills

Skill · How-to guide

Turn any codebase, with its docs, SQL schemas, configs, and PDFs, into a queryable knowledge graph. A /graphify skill for Claude Code, Cursor, Codex, and Gemini CLI: local deterministic AST parsing, every edge explained, no vector store.

by Graphify-Labs★ 148,3521 skills

Skill · How-to guide

archify

Turn any idea, plan, or codebase into a beautiful interactive diagram. An agent skill for Claude Code, Codex, and more.

by tt-a1i★ 96,7571 skills

Skill · How-to guide

Why it ranks here

Lists are ordered by a usage score (out of 100) built from these parts

Popularity	0/80	GitHub stars or weekly downloads: the larger counts 60, the smaller 20
Freshness	12/12	Full marks for a release or code change within 30 days
Still answering	8/8	The cloud endpoint answered at the last check
Usage score	20/100

Quality: Passed 0/3 basic checks (shown, not used for ordering) · Momentum: No data yet (Used only on the Trending tab)

What we check → · Check results as JSON

Install

Pick the AI app you use, then copy the settings.

Passed 0/3 checks · What you ask goes through the maker’s server (atoms.pipavia.com) · ✓ Commands checked Nov 16, 2026

First: which AI do you use?

ClaudeWeb · app · phoneChatGPTWebClaude CodeTerminalCursorCode editorVS CodeCode editorOtherOther apps

Pick your app and the steps appear below.

Works with Claude · about 5 min

You need a Codebase structural query — Atom key (create it on the maker’s site) · Set it up once on claude.ai or the desktop app, then use it in chat · free accounts can add 1 · on Team/Enterprise an Owner adds it

Sign up and create a Codebase structural query — Atom key
Open the maker’s site, sign up and create an API key for the next step. Check the maker’s site for pricing and free plans.
Open the Codebase structural query — Atom site ↗
Done
Open Claude’s Connectors page
CustomizeConnectors
Done
Click “Add” → “Custom” → “Web” and fill in these 2 fields
Copy each value into the field with the same name in Claude, then click Continue
Name · NameCodebase structural query — Atom
Remote MCP server URL · Addresshttps://atoms.pipavia.com/mcp/codebase-structural-query
Under Request headers, add this name and value
Header nameAuthorization
ValueBearer <paste your key here>
Paste the key only into the app’s field, never into a chat or to anyone
Click Continue past the sign-in settings Claude detected · under Authentication choose what the maker says (Sign in now, Sign in when needed or No sign in), then click Add
Done
Turn it on in a chat
+ConnectorsCodebase structural query — Atom
Done
Try it
Use Codebase structural query — Atom and tell me what you can do for me, then show me one thing
✓ If Claude says it is using Codebase structural query — Atom or shows a Codebase structural query — Atom tool in the answer, you are connected

Menu names checked against Anthropic’s help page on Nov 11, 2026 · your screen may differ slightly by app version

ChatGPT cannot connect Codebase structural query — Atom yet

Codebase structural query — Atom needs your own key to connect, but OpenAI’s help page only describes OAuth sign-in; there is no key option we could verify

What you can do instead

A · Use an app that can connect Codebase structural query — Atom

Steps for Claude →You need a Codebase structural query — Atom key (create it on the maker’s site) · Set it up once on claude.ai or the desktop app, then use it in chat · free accounts can add 1 · on Team/Enterprise an Owner adds it
Steps for Claude Code →You need a Codebase structural query — Atom key (create it on the maker’s site)
Steps for Cursor →You need a Codebase structural query — Atom key (create it on the maker’s site)
Steps for VS Code →You need a Codebase structural query — Atom key (create it on the maker’s site)

B · Others in Developer tools that work with ChatGPT

Picked from the most used in the same category, only ones that connect by address with no key

Sentry✓ ChatGPT
Compiler Explorer✓ ChatGPT
GitDiagram✓ ChatGPT

Works with Claude Code · about 5 min

You need a Codebase structural query — Atom key (create it on the maker’s site)

Sign up and create a Codebase structural query — Atom key
Open the maker’s site, sign up and create an API key for the next step. Check the maker’s site for pricing and free plans.
Open the Codebase structural query — Atom site ↗
Done
Open Terminal
Mac: press Command+Space and type Terminal · Windows: open PowerShell
Done
3
Paste this command and press Enter
```
claude mcp add --transport http --scope user atom-codebase-structural-query https://atoms.pipavia.com/mcp/codebase-structural-query --header 'Authorization: Bearer your-value'
```
Replace “your-value” with your key before pressing Enter
Paste the key only into the app’s field, never into a chat or to anyone
Done
Type /mcp in Claude Code
You should see Codebase structural query — Atom listed as connected
Done
Try it
Use Codebase structural query — Atom and tell me what you can do for me, then show me one thing
✓ If Claude Code says it is using Codebase structural query — Atom or shows a Codebase structural query — Atom tool in the answer, you are connected

Menu names checked against Anthropic’s help page on Nov 11, 2026 · your screen may differ slightly by app version

Works with Cursor · about 5 min

You need a Codebase structural query — Atom key (create it on the maker’s site)

Sign up and create a Codebase structural query — Atom key
Open the maker’s site, sign up and create an API key for the next step. Check the maker’s site for pricing and free plans.
Open the Codebase structural query — Atom site ↗
Done
Click this button to open Cursor
Open in Cursor
Cursor asks you to confirm; click Install
Done
Fill in your key
In the Codebase structural query — Atom settings, Authorization is empty; add your key and save
Paste the key only into the app’s field, never into a chat or to anyone
Done
Open the AI chat in Cursor in Agent mode
Done
Try it
Use Codebase structural query — Atom and tell me what you can do for me, then show me one thing
✓ If Cursor says it is using Codebase structural query — Atom or shows a Codebase structural query — Atom tool in the answer, you are connected

Menu names checked against Cursor’s help page on Nov 11, 2026 · your screen may differ slightly by app version

Works with VS Code · about 5 min

You need a Codebase structural query — Atom key (create it on the maker’s site)

Sign up and create a Codebase structural query — Atom key
Open the maker’s site, sign up and create an API key for the next step. Check the maker’s site for pricing and free plans.
Open the Codebase structural query — Atom site ↗
Done
Click this button to open VS Code
Open in VS Code
VS Code asks you to confirm; click Install
Done
Fill in your key
In the Codebase structural query — Atom settings, Authorization is empty; add your key and save
Paste the key only into the app’s field, never into a chat or to anyone
Done
Open the AI chat in VS Code in Agent mode
Done
Try it
Use Codebase structural query — Atom and tell me what you can do for me, then show me one thing
✓ If VS Code says it is using Codebase structural query — Atom or shows a Codebase structural query — Atom tool in the answer, you are connected

Menu names checked against VS Code’s help page on Nov 11, 2026 · your screen may differ slightly by app version

Other apps that use MCP, such as Windsurf, Zed or Gemini CLI, each add servers differently. See how in the app list.

See every app that uses MCP →

Address for apps that connect over the web

Addresshttps://atoms.pipavia.com/mcp/codebase-structural-query

JSON settings are under “For developers” below

Stuck? Ask people who use Codebase structural query — Atom💬 Discussion →

For developers: Terminal commands and JSON settings

Over the web

Claude Code

claude mcp add --transport http --scope user atom-codebase-structural-query https://atoms.pipavia.com/mcp/codebase-structural-query --header 'Authorization: Bearer your-value'

Cursor (~/.cursor/mcp.json)

{
  "mcpServers": {
    "atom-codebase-structural-query": {
      "url": "https://atoms.pipavia.com/mcp/codebase-structural-query",
      "headers": {
        "Authorization": "Bearer your-value"
      }
    }
  }
}

VS Code (mcp.json)

{
  "servers": {
    "atom-codebase-structural-query": {
      "type": "http",
      "url": "https://atoms.pipavia.com/mcp/codebase-structural-query",
      "headers": {
        "Authorization": "Bearer your-value"
      }
    }
  }
}

Values you fill in

Authorization secret required HTTP header
Your Conduit Atoms gateway key, as 'Bearer '. One gateway key works across atoms; it must hold this atom's scope (codebase_structural_query). Sign up at https://atoms.pipavia.com, open this atom, and…

Descriptions are as written by the maker.

These settings are generated from the maker’s registry entry. If the README says otherwise, follow the README.

At a glance

GitHub stars i: 0
Downloads per weeki: Not on npm/PyPI
Verified domain: ✓ aimlds.org
Licence i: No licence stated
Connection: Runs in the cloud
Transport: streamable-http
Latest versioni: 0.1.0
Categoryi: Developer tools
Published to registryi: Nov 16, 2026
Code last changedi: –
Maker: nrupala
Repo: –
Website: atoms.pipavia.com
Registry status: Active

Which apps can use it

Based on how this server connects and on each app’s own docs, checked Nov 10, 2026.

Connect over the internet in

Claude Goose LM Studio Msty Studio Cherry Studio Cursor VS Code + GitHub Copilot Visual Studio Windsurf (Devin Desktop)Zed Kiro Cline Continue JetBrains AI Assistant Claude Code Codex CLI Gemini CLI OpenCode nodecode Warp LibreChat Open WebUI Raycast

All apps, with pros and cons →

What it can do

The server asks you to sign in before it lists its tools.

Basic checksi

We check information anyone can see; we have not read the code. Checks that do not apply are left out of the count. · Checked Nov 16, 2026

! Caution
Maker matches the repo
The publisher (aimlds.org) is not the repo owner (nrupala); someone else may have listed it
… Not checked yet
Still maintained
We have not read this repo from GitHub yet
… Not checked yet
Has a licence
We have not read this repo from GitHub yet
! Caution
Endpoint responds
Refused access (HTTP 401) without offering OAuth sign-in. It may need a key, or it may be blocking bots; not confirmed.
! Caution
Sign-in with OAuth
Needs a key or token that you copy and paste yourself
… Not checked yet
No hidden instructions in tool descriptions
Not checked yet; we read the tool list when we check the endpoint

What we check → · JSON

Makers: ask for a re-check or report wrong info

For makers: add a badge to your README

If you made this, paste this code into your README. The badge links back to this page.

[![Featured on PopNx MCP](https://mcp.popnx.com/badge/aimlds-atom-codebase-structural-query.svg)](https://mcp.popnx.com/en/servers/aimlds-atom-codebase-structural-query)

Discussion

Ask, share a tip or report that it does not work. Sorted by what people marked helpful.

No posts yet. Be the first to ask or share.

Posts here are written by users, not the PopNx team.

User reviews

No reviews yet

Compared with others in Developer toolsi

More stars than 0% of the other 5940 servers in this category
Published to the registry more recently than 99% of the other 5940 servers in this category
Basic checks equal to or better than 5% of the other 5940 servers in this category

Compared with every active server in this category in the registry. Stars count only when the publisher owns the repo.

Common questions

Is Codebase structural query — Atom safe?

It passed 0 of 3 applicable basic checks. We have not read the code. Before adding a key or token, see what access the server asks for and use a key with only the permissions you need.

What keys or codes does it need?

You need to fill in: Authorization

Does it run on my computer or in the cloud?

It runs in the maker’s cloud. Connect over the internet with nothing to install, but what you send passes through the maker’s servers.

Is it still maintained?

The GitHub repo last changed –, and the latest version (0.1.0) reached the registry today.

Which apps can use it?

Apps that support MCP, such as Claude Desktop, Claude Code, Cursor and VS Code. It connects by URL, so apps that accept remote MCP servers work too, such as ChatGPT on the web (full MCP on Business and above; Pro read-only).

What can I use instead?

In the same category: GitDiagram, Appllama, Cloudflare MCP, Omnara, Repowise

Similar alternatives

Same category, other makers, commands already checked. Official ones first, then by stars.

Reading a card:↓ Downloads per weeki★ GitHub starsiThree pillars: reviews · checks · usageiUpdated = latest version published to the registryi

GitDiagram

Architecture diagrams, explanations and Mermaid source for public GitHub repositories.

by ahmedkhaleel2004Widely used★ 18.9KUpdated 2 months ago

Runs in the cloud✓ service owner · gitdiagram.comTried by the PopNx team

How to connect

Appllama

Study screens, flows and paywalls from top-earning iOS apps, then build from what wins.

by AppllamaWidely used★ 5.2KUpdated 3 months ago

Runs in the cloud✓ service owner · appllama.io

How to connect

Cloudflare MCP

Cloudflare MCP servers

by cloudflareWidely used★ 4.5KUpdated 14 months ago

Runs in the cloud✓ service owner · mcp.cloudflare.comTried by the PopNx team

How to connect

Omnara

Deploy durable AI agents with Omnara, an open-source managed-agent platform.

by omnara-aiWidely used★ 3.4KUpdated 2 months ago

Runs in the cloud✓ service owner · omnara.com

How to connect

Repowise

Codebase intelligence for AI coding agents: graph, git history, docs, decisions, code health.

by repowise-devWidely used↓ 6.5K/wk★ 8.1K Stars for the whole repoUpdated 3 days ago

Computer or cloud✓ service owner · repowise.dev

Install

Compared with similar ones
	This one Codebase structural query — Atom	GitDiagram	Appllama	Cloudflare MCP	Omnara	Repowise
Runs where	Runs in the cloud, nothing to install	Runs in the cloud, nothing to install	Runs in the cloud, nothing to install	Runs in the cloud, nothing to install	Runs in the cloud, nothing to install	Cloud or install on your computer
Needs a key	Yes	No	No	No	No	No
Add with + in Claude	No	No	No	Yes	No	No
Basic checks	0/3	4/4	4/4	4/4	4/4	5/5
License	–	MIT	MIT	Apache-2.0	Apache-2.0	AGPL-3.0
Price	No cost listed in the registry	No cost listed in the registry	No cost listed in the registry	No cost listed in the registry	No cost listed in the registry	No cost listed in the registry

README from the maker

No README found in the repo

Codebase structural query — Atom

What it does

Use together with

Why it ranks here

Install

Sign up and create a Codebase structural query — Atom key

Open Claude’s Connectors page

Click “Add” → “Custom” → “Web” and fill in these 2 fields

Turn it on in a chat

Try it

What you can do instead

Sign up and create a Codebase structural query — Atom key

Open Terminal

Paste this command and press Enter

Type /mcp in Claude Code

Try it

Sign up and create a Codebase structural query — Atom key

Click this button to open Cursor

Fill in your key

Open the AI chat in Cursor in Agent mode

Try it

Sign up and create a Codebase structural query — Atom key

Click this button to open VS Code

Fill in your key

Open the AI chat in VS Code in Agent mode

Try it

Over the web

Values you fill in

At a glance

Which apps can use it

Related guides

What it can do

Basic checksi

Maker matches the repo

Still maintained

Has a licence

Endpoint responds

Sign-in with OAuth

No hidden instructions in tool descriptions

Discussion

User reviews

Compared with others in Developer toolsi

Common questions

Similar alternatives

README from the maker