askPulse

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검사 2/3 통과 · 내가 묻는 내용은 제작자 서버(askpulse.plantdatabases.org)를 거쳐요 · ✓ 명령 확인 2026년 11월 14일

claude mcp add --transport http --scope user askpulse https://askpulse.plantdatabases.org/mcp

{
  "mcpServers": {
    "askpulse": {
      "url": "https://askpulse.plantdatabases.org/mcp"
    }
  }
}

{
  "servers": {
    "askpulse": {
      "type": "http",
      "url": "https://askpulse.plantdatabases.org/mcp"
    }
  }
}

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이 서버의 연결 방식과 각 앱의 공식 문서를 바탕으로 했어요. 2026년 11월 10일 확인.

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도구 이름과 설명은 서버가 2026년 11월 14일에 알려 준 그대로예요. 우리가 아니라 제작자가 쓴 글이고, 일반 텍스트로만 보여 드려요.

• search_data

  Full-text search across all askPulse resources (genes, germplasm, genotyping datasets, files). Filters (exact values): database e.g. 'Ensembl Plants', 'Legume Information System', 'GBIF genebank accessions'; entry_type e.g. 'Gene annotation', 'Germplasm', 'Genotyping Experiment',

• find_germplasm

  Find pulse and legume genebank accessions by accession number or name (e.g. 'ICC 4958' for chickpea at ICRISAT): chickpea, lentil, pea, faba bean, lupin, grass pea, Phaseolus, Vigna, pigeonpea, soybean, peanut and Medicago accessions from GBIF, with the holding genebank (FAO WIEW

• data_sources

  What askPulse currently indexes: record counts per database and data type, and data versions.

• find_gene

  Look up a gene by Ensembl gene ID or gene name/symbol in Ensembl Plants: species, location, assembly, biotype, description and link. Names are searched in all of: pisum_sativum (Cameor v1a), pisum_sativum_gca024323335v2gb (pea ZW6), pisum_sativum_gca964186695v1gb (pea JI2822), vi

• genes_in_region

  Genes overlapping a region of one Ensembl Plants genome (max 5 Mb). species is an Ensembl name, e.g. 'pisum_sativum', 'vicia_faba', 'glycine_max' or 'lupinus_angustifolius'; chromosome names as in that assembly. Chromosome names differ by assembly: pea 1LG6..7LG7, narrow-leafed l

• orthologues

  Orthologues of a gene from Ensembl Plants Compara (gene trees across plant genomes), e.g. the Brassica copies of an Arabidopsis gene. gene: Ensembl ID or name; target_species: Ensembl name to restrict to (e.g. 'medicago_truncatula' or 'pisum_sativum'). Returns orthologue IDs, spe

• arabidopsis_function

  Function of a gene through its Arabidopsis thaliana orthologue(s): Ensembl Plants Compara orthologues, then UniProtKB curated function, protein and gene names, mutant (disruption) phenotype, subcellular location and GO terms. gene: an Ensembl gene ID or name of any crop genome he

• legume_gene

  Chickpea or lentil gene from the Legume Information System (these genomes are not in Ensembl Plants): location, functional description, LIS legume gene family and link. gene: a gene ID (e.g. 'Ca1g000100', 'Lcu.2RBY.1g000010') or words from the description (e.g. 'flowering locus T

• legume_pangene

  The same gene across chickpea or pea assemblies and annotation versions, from LIS pangene sets (synteny-aware clustering). Chickpea (Cicer.pan3): kabuli CDC Frontier v3 (Ca1g000200), v1/v2 (Ca_00003), desi ICC 4958 (Ca_) and wild C. reticulatum (Cr1g…) and C. echinospermum (Ce…).

• legume_genes_in_region

  Chickpea or lentil genes in a region (max 5 Mb) with descriptions and gene families. dataset 'chickpea' (CDC Frontier v3, chromosomes chr1-chr8), 'chickpea_kabuli_v1' (UWA kabuli v2.6.3, Ca1-Ca8), 'chickpea_desi' (UWA desi v3.0, Ca1-Ca8) or 'lentil' (Chr1-Chr7). Chromosome number

• legume_family

  Members of an LIS legume gene family across chickpea, lentil, pea, soybean and Medicago truncatula. gene: a chickpea/lentil/pea/Medicago gene ID, a soybean Ensembl ID (GLYMA_01G000600) or LIS name (Glyma.01G000600), or a family ID (Legume.fam3.00142). Use it to go from a soybean

• legume_qtl

  QTL and GWAS results for legumes from the Legume Information System: soybean (SoyBase QTL on genetic maps plus GWAS; marker positions on Wm82.a2 = Ensembl glycine_max), common bean (G19833 v1 = Ensembl phaseolus_vulgaris; some GWAS on G19833 v2), cowpea (IT97K-499-35 v1) and pean

• legume_qtl_traits

  Traits with QTL or GWAS results in the Legume Information System, with counts per species (soybean (SoyBase QTL on genetic maps plus GWAS; marker positions on Wm82.a2 = Ensembl glycine_max), common bean (G19833 v1 = Ensembl phaseolus_vulgaris; some GWAS on G19833 v2), cowpea (IT9

• lupin_markers

  Narrow-leafed lupin (Lupinus angustifolius) genetic map: 9,972 markers (DArTseq SNP/PAV, Fluidigm SNP, indel, SSR, gene-based) and domestication loci (Tardus and Lentus pod shattering, Leucospermus white flower/seed, Iucundus low alkaloid, Mollis soft seed, Ku vernalisation indep

• expression_experiments

  Soybean and Medicago RNA-seq experiments held by askPulse (Expression Atlas and, for chickpea and pea, the Legume Information System): baseline (TPM by tissue / developmental stage / treatment) and differential (stress, pathogen, genotype contrasts). query filters descriptions/la

• gene_expression

  Where and when a pulse and legume gene is expressed, and under which treatments it changes, from Expression Atlas and, for chickpea and pea, the Legume Information System. gene: Ensembl gene ID (e.g. GLYMA_01G000600, pea Psat1g000360), a chickpea CDC Frontier v3 ID (Ca1g000100) o

• expression_genes

  Genes characteristic of a tissue/stage or responsive to a treatment in one Expression Atlas experiment. Baseline experiment + group (text matched to group labels, e.g. 'root', 'grain'): genes with TPM >= min_tpm in a matching group ranked by specificity = (max TPM in matching gro

• search_literature

  Search publications and preprints in Europe PMC (PubMed, PMC, bioRxiv and others). query: free text or Europe PMC syntax (e.g. 'grain size QTL 6A', 'TITLE:"pan-genome"'). gene: optional gene name or Ensembl ID; its curated synonyms and RefSeq IDs are OR-ed into the query (e.g. ge

• get_paper

  Full record for one paper: DOI (10.xxxx/..), PMID (digits) or PMCID (PMC...). Returns the abstract, open-access status and full-text links.

• gene_pathways

  Plant Reactome metabolic and signalling pathways of a gene (Gramene), with the top-level category and a link to the pathway diagram. gene: an Ensembl Plants gene ID or a gene name/symbol. Pathways are projected from rice by orthology, so say they are inferred. Use pathway_genes f

• pathway_genes

  Genes in a Plant Reactome pathway: pathway is a name or words from it ('jasmonic acid biosynthesis', 'gibberellin', 'flavonoid') or a stable ID (R-TAE-1119332). species: a species name as Plant Reactome writes it ('Triticum aestivum', 'Brassica napus', 'Glycine max'); default all

• trait_hits

  Trait-associated positions across the genome for a chromosome overview: GWAS marker-trait associations and peaks, named trait genes and mapped trait loci held by this site, with chromosome sizes, each with a genome browser link where the assembly is loaded. trait: words to match

• pulse_gene_view

  Interactive gene view for one pulse and legume gene: a relationship map of its orthologues across legumes (Ensembl Compara), members of its LIS legume gene family (chickpea, lentil, pea, soybean, Medicago), Arabidopsis function, expression contrasts and recent papers, with tabs f

기본 점검i

누구나 볼 수 있는 정보를 점검했고, 코드는 읽지 않았어요. 해당하지 않는 항목은 개수에서 뺐어요. · 2026년 11월 14일 점검

• ! 주의

  제작자와 저장소 일치

  레지스트리에 소스 저장소가 없어서, 게시자(plantdatabases.org)와 코드를 맞춰 볼 수 없어요

• … 아직 점검 안 함

  계속 관리되고 있음

  아직 GitHub에서 이 저장소를 읽어 오지 않았어요

• … 아직 점검 안 함

  라이선스 있음

  아직 GitHub에서 이 저장소를 읽어 오지 않았어요

• ✓ 통과

  엔드포인트 응답

  818ms 만에 응답(HTTP 200)

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